PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_6447_iso_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C2H2
Protein Properties Length: 136aa    MW: 15000.9 Da    PI: 10.2995
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_6447_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.62.4e-066789123
                                        EEETTTTEEESSHHHHHHHHHHT CS
                             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                        ++C++C+k F r  nL+ H r H
  cra_locus_6447_iso_1_len_949_ver_3 67 FVCEICNKGFQRDQNLQLHRRGH 89
                                        89*******************88 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.32E-56590No hitNo description
Gene3DG3DSA:3.30.160.602.8E-66689IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121711.4E-56789IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.9496789IPR007087Zinc finger, C2H2
PROSITE patternPS0002806989IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MPVDIDNSSA MNDSTASGEA SASSSGNQAA PPPKPAVKKK RNLPGMPDPD AEVIALSPKT  60
LLATNRFVCE ICNKGFQRDQ NLQLHRRGHN LPWKLRQRSS KDVKKRVYVC PEPTCVHHDP  120
SRALGDLTGR LIQRFX
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016560587.12e-75PREDICTED: protein indeterminate-domain 1-like
SwissprotQ9SCQ65e-69IDD2_ARATH; Protein indeterminate-domain 2
SwissprotQ9LVQ77e-69IDD1_ARATH; Protein indeterminate-domain 1
TrEMBLM5VVT92e-75M5VVT9_PRUPE; Uncharacterized protein
STRINGPGSC0003DMT4000330394e-74(Solanum tuberosum)